| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 848 |
| Bay of Bengal | Sea/Bay/Gulf | native | 119203 |
| Central Indo-Pacific | sea/bay/gulf | native | 848 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 848 |
| East Caroline Islands | Sea/Bay/Gulf | native | 848 |
| Eastern Coral Triangle | sea/bay/gulf | native | 848 |
| Gulf of Aden | Sea/Bay/Gulf | native | 848 |
| Gulf of Thailand | Sea/Bay/Gulf | native | 848 |
| Indian Ocean | Sea/Bay/Gulf | native | 848 |
| Indonesian Sea | Sea/Bay/Gulf | native | 848 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 848 |
| Pacific Ocean | Sea/Bay/Gulf | native | 848 |
| Red Sea and Gulf of Aden | sea/bay/gulf | native | 848 |
| Solomon Archipelago | Sea/Bay/Gulf | native | 848 |
| Somali Coastal Current | Sea/Bay/Gulf | native | 848 |
| South China Sea | Sea/Bay/Gulf | native | 848 |
| South India and Sri Lanka | Sea/Bay/Gulf | native | 119203 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 848 |
| Sunda Shelf | sea/bay/gulf | native | 848 |
| Temperate Northern Pacific | sea/bay/gulf | native | 848 |
| Tropical Northwestern Pacific | sea/bay/gulf | native | 848 |
| Tubbataha Reefs | Sea/Bay/Gulf | native | 121724 |
| West Caroline Islands | Sea/Bay/Gulf | native | 848 |
| Western and Northern Madagascar | Sea/Bay/Gulf | native | 848 |
| Western Indian Ocean | sea/bay/gulf | native | 848 |
| Western Indo-Pacific | sea/bay/gulf | native | 848 |