| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Bohol Sea | Sea/Bay/Gulf | native | 821 |
| Camotes Sea | Sea/Bay/Gulf | native | 821 |
| Central Indo-Pacific | sea/bay/gulf | native | 821 |
| Eastern Coral Triangle | sea/bay/gulf | native | 3204 |
| Eastern Philippines | Sea/Bay/Gulf | native | 821 |
| Indonesian Sea | Sea/Bay/Gulf | native | 75725 |
| Northeast Sulawesi | Sea/Bay/Gulf | native | 75725 |
| Pacific Ocean | Sea/Bay/Gulf | native | 821 |
| Papua | Sea/Bay/Gulf | native | 75725 |
| Solomon Archipelago | Sea/Bay/Gulf | native | 3204 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 821 |
| Tropical Northwestern Pacific | sea/bay/gulf | native | 103722 |
| West Caroline Islands | Sea/Bay/Gulf | native | 103722 |
| Western Coral Triangle | sea/bay/gulf | native | 821 |