| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Bismarck Sea | Sea/Bay/Gulf | native | 104516 |
| Central Indian Ocean Islands | sea/bay/gulf | native | 107380 |
| Central Indo-Pacific | sea/bay/gulf | native | |
| Davao Gulf | Sea/Bay/Gulf | native | 269 |
| Eastern Coral Triangle | sea/bay/gulf | native | 104516 |
| Eastern Indo-Pacific | sea/bay/gulf | native | 98575 |
| Eastern Philippines | Sea/Bay/Gulf | native | 910 |
| Fiji Islands | Sea/Bay/Gulf | native | 107378 |
| Gilbert/Ellis Islands | Sea/Bay/Gulf | native | 107319 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 113712 |
| Gulf of Thailand | Sea/Bay/Gulf | native | 84399 |
| Indian Ocean | Sea/Bay/Gulf | native | 269 |
| Indonesian Sea | Sea/Bay/Gulf | native | 269 |
| Lesser Sunda | Sea/Bay/Gulf | native | 269 |
| Line Islands | Sea/Bay/Gulf | native | 107319 |
| Maldives | Sea/Bay/Gulf | native | 107380 |
| Mariana Islands | Sea/Bay/Gulf | native | 101074 |
| Marshall Islands | Sea/Bay/Gulf | native | 107379 |
| Marshall, Gilbert, and Ellis Islands | sea/bay/gulf | native | 107319 |
| New Caledonia | Sea/Bay/Gulf | native | 100373 |
| Pacific Ocean | Sea/Bay/Gulf | native | 269 |
| Palawan/North Borneo | Sea/Bay/Gulf | native | 269 |
| Seychelles | Sea/Bay/Gulf | native | 107319 |
| Solomon Archipelago | Sea/Bay/Gulf | native | 269 |
| Solomon Sea | Sea/Bay/Gulf | native | 104516 |
| South China Sea | Sea/Bay/Gulf | native | 84399 |
| Southeast Polynesia | sea/bay/gulf | native | 98575 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 269 |
| Sunda Shelf | sea/bay/gulf | native | 269 |
| Sunda Shelf/Java Sea | Sea/Bay/Gulf | native | 269 |
| Tropical Northwestern Pacific | sea/bay/gulf | native | 101074 |
| Tropical Southwestern Pacific | sea/bay/gulf | native | 107378 |
| Tubbataha Reefs | Sea/Bay/Gulf | native | 121724 |
| Vanuatu | Sea/Bay/Gulf | native | 104516 |
| Verde Island Passage | Sea/Bay/Gulf | native | 910 |
| Visayan Sea | Sea/Bay/Gulf | native | 269 |
| West Caroline Islands | Sea/Bay/Gulf | native | 101074 |
| Western Coral Triangle | sea/bay/gulf | native | 910 |
| Western Indian Ocean | sea/bay/gulf | native | 107319 |
| Western Indo-Pacific | sea/bay/gulf | native | 107319 |