| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Arabian Sea | Sea/Bay/Gulf | native | 81102 |
| Bight of Sofala/Swamp Coast | Sea/Bay/Gulf | native | 848 |
| Cargados Carajos/Tromelin Island | Sea/Bay/Gulf | native | 848 |
| Central Indo-Pacific | sea/bay/gulf | native | |
| Delagoa | Sea/Bay/Gulf | native | 848 |
| East African Coral Coast | Sea/Bay/Gulf | native | 848 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 791 |
| Gulf of Thailand | Sea/Bay/Gulf | native | 84399 |
| Indian Ocean | Sea/Bay/Gulf | native | 848 |
| Mariana Islands | Sea/Bay/Gulf | native | 101074 |
| Mascarene Islands | Sea/Bay/Gulf | native | 848 |
| New Caledonia | Sea/Bay/Gulf | native | 100373 |
| Pacific Ocean | Sea/Bay/Gulf | native | 910 |
| Palawan/North Borneo | Sea/Bay/Gulf | native | 83555 |
| Persian Gulf | Sea/Bay/Gulf | native | 848 |
| Polynesian Waters | Sea/Bay/Gulf | native | 121505 |
| Rapa-Pitcairn | Sea/Bay/Gulf | native | 121505 |
| Seychelles | Sea/Bay/Gulf | native | 848 |
| Somali/Arabian | sea/bay/gulf | native | 81102 |
| South China Sea | Sea/Bay/Gulf | native | 8294 |
| Southeast Madagascar | Sea/Bay/Gulf | native | 848 |
| Sunda Shelf | sea/bay/gulf | native | 83555 |
| Sunda Shelf/Java Sea | Sea/Bay/Gulf | native | 83555 |
| Tropical Northwestern Pacific | sea/bay/gulf | native | 101074 |
| Tropical Southwestern Pacific | sea/bay/gulf | native | 100373 |
| Tubbataha Reefs | Sea/Bay/Gulf | native | 121724 |
| Verde Island Passage | Sea/Bay/Gulf | native | 910 |
| West Caroline Islands | Sea/Bay/Gulf | native | 101074 |
| Western and Northern Madagascar | Sea/Bay/Gulf | native | 848 |
| Western Coral Triangle | sea/bay/gulf | native | 83555 |
| Western Indian Ocean | sea/bay/gulf | native | 848 |
| Western Indo-Pacific | sea/bay/gulf | native | 848 |