| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Calamianes Islands | Sea/Bay/Gulf | native | 8295 |
| Central Indo-Pacific | sea/bay/gulf | native | 75725 |
| Cold Temperate Northwest Pacific | sea/bay/gulf | native | 75831 |
| East China Sea | Sea/Bay/Gulf | native | 75831 |
| Gulf of Tonkin | Sea/Bay/Gulf | native | 348 |
| Indian Ocean | Sea/Bay/Gulf | native | 348 |
| Indonesian Sea | Sea/Bay/Gulf | native | 75725 |
| Northeast Sulawesi | Sea/Bay/Gulf | native | 75725 |
| Pacific Ocean | Sea/Bay/Gulf | native | 348 |
| Palawan/North Borneo | Sea/Bay/Gulf | native | 8295 |
| South China Sea | Sea/Bay/Gulf | native | 75831 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 821 |
| Sunda Shelf | sea/bay/gulf | native | 348 |
| Temperate Northern Pacific | sea/bay/gulf | native | 75831 |
| West Philippine Sea | Sea/Bay/Gulf | native | 8295 |
| Western Coral Triangle | sea/bay/gulf | native | 75725 |
| Western Indo-Pacific | sea/bay/gulf | native | 348 |
| Yellow Sea | Sea/Bay/Gulf | native | 75831 |