| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Andaman and Nicobar Islands | Sea/Bay/Gulf | native | 119072 |
| Banda Sea | Sea/Bay/Gulf | native | 846 |
| Bismarck Sea | Sea/Bay/Gulf | native | 846 |
| Central and Southern Great Barrier Reef | Sea/Bay/Gulf | native | 846 |
| Central Indo-Pacific | sea/bay/gulf | native | 846 |
| East China Sea | Sea/Bay/Gulf | native | 846 |
| Eastern Coral Triangle | sea/bay/gulf | native | 846 |
| Gulf of Papua | Sea/Bay/Gulf | native | 846 |
| Halmahera | Sea/Bay/Gulf | native | 846 |
| Indian Ocean | Sea/Bay/Gulf | native | 846 |
| Lesser Sunda | Sea/Bay/Gulf | native | 846 |
| Malacca Strait | Sea/Bay/Gulf | native | 846 |
| Marshall Islands | Sea/Bay/Gulf | native | 119078 |
| Northeast Sulawesi | Sea/Bay/Gulf | native | 846 |
| Pacific Ocean | Sea/Bay/Gulf | native | 846 |
| Palawan/North Borneo | Sea/Bay/Gulf | native | 846 |
| Papua | Sea/Bay/Gulf | native | 846 |
| Solomon Archipelago | Sea/Bay/Gulf | native | 846 |
| Solomon Sea | Sea/Bay/Gulf | native | 846 |
| South China Sea | Sea/Bay/Gulf | native | 846 |
| South Kuroshio | Sea/Bay/Gulf | native | 846 |
| Southeast Papua New Guinea | Sea/Bay/Gulf | native | 846 |
| Southern China | Sea/Bay/Gulf | native | 846 |
| Southern Java | Sea/Bay/Gulf | native | 846 |
| Sulawesi Sea/Makassar Strait | Sea/Bay/Gulf | native | 846 |
| Sunda Shelf/Java Sea | Sea/Bay/Gulf | native | 846 |
| Temperate Northern Pacific | sea/bay/gulf | native | 89710 |
| Torres Strait Northern Great Barrier Reef | Sea/Bay/Gulf | native | 846 |
| Tropical Northwestern Pacific | sea/bay/gulf | native | 98622 |
| West Caroline Islands | Sea/Bay/Gulf | native | 98622 |
| Western Coral Triangle | sea/bay/gulf | native | 846 |
| Western Sumatra | Sea/Bay/Gulf | native | 846 |